Found the bug in my code. However histogram results are more correct they do not show the results i had hoped.
Image With Target: 0.342762
Bright Green Empty: 0.333333
Image With Target: 0.334144
Bright Green Empty: 0.333333
dark Green Empty: 0.333333
As you can see the fact a target is present seems to have little improvement to the chi squared value. I was hoping to see a large jump in the difference. A possible direction i hope to take is to use the most common pixel colouring for each chanel and compare with that to boost different values.
Code Available Here: CODE
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